The club was formed in March 2021 before kick off Nepal Super League the first ever franchise football league in Nepal under the supervision of All Nepal Football Association (ANFA). The club will play their first match on 25 April 2021 against Butwal Lumbini FC.
Pokhara Thunders squad for 2021 season.
- As of 16 April 2021
Note: Flags indicate national team as defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.